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Tue, 7 May 2019 05:36:38 +0200
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AlCoB 2019: call for participation*To be removed from our mailing list, please respond to this message with UNSUBSCRIBE in the subject line*


**********************************************************************************

6th INTERNATIONAL CONFERENCE ON ALGORITHMS FOR COMPUTATIONAL BIOLOGY


AlCoB 2019


Berkeley, California, USA


May 28-30, 2019


Co-organized by:


University of California, Berkeley


Institute for Research Development, Training and Advice, Brussels/London


http://alcob2019.irdta.eu/

**********************************************************************************


PROGRAM


Tuesday, May 28


09:00 - 09:30    Registration


09:30 - 09:40    Opening


09:40 - 10:30    Igor Jurisica. Explanable AI for Data-driven Medicine - Invited lecture


10:30 - 10:45    Break


10:45 - 12:00


Tom Davot, Annie Chateau, Rodolphe Giroudeau and Mathias Weller. New Polynomial-time Algorithm around the Scaffolding Problem


Ozan Kahramanogullari. Enumerating Dominant Pathways in Biological Networks by Information Flow Analysis


Sridevi Maharaj, Zarin Ohiba and Wayne Hayes. Comparing Different Graphlet Measures for Evaluating Network Model Fits to BioGRID PPI Networks


12:00 - 13:30    Lunch


13:30 - 14:20    Lior Pachter. Algorithms for Single-cell Genomics - Invited lecture


14:20 - 14:35    Break


14:35 - 15:50


Louis Petingi and Tamar Schlick. Graph-theoretic Partitioning of RNAs and Classification of Pseudoknots


Alexander Shlemov and Anton Korobeynikov. PathRacer: Racing Profile HMM Paths on Assembly Graph


Pavel Avdeyev, Maria Atamanova, and Max A. Alekseyev. A Uniform Theory of Adequate Subgraphs for the Genome Median, Halving, and Aliquoting Problems


15:50 - 17:00    Poster session I


---


Wednesday, May 29


09:30 - 10:20    Pavel A. Pevzner. Bioinformatics: A Servant or the Queen of Molecular Biology? - Invited lecture


10:20 - 10:35    Break


10:35 - 11:50


Veronica Guerrini and Giovanna Rosone. Lightweight Metagenomic Classification via eBWT


Christopher Wright, Sriram Krishnamoorty and Milind Kulkarni. MULKSG: MULtiple K Simultaneous Graph Assembly


João Paulo Pereira Zanetti, Leonid Chindelevitch and João Meidanis. Counting Sorting Scenarios and Intermediate Genomes for the Rank Distance


11:50 - 13:20    Group photo and Lunch


13:20 - 14:10    Teresa Przytycka. Exploring Phenotypic Heterogeneity across Tissues and Conditions with Network-based Approaches - Invited lecture


14:10 - 14:25    Break


14:25 - 15:40    


João Paulo Pereira Zanetti, Leonid Chindelevitch and João Meidanis. Generalizations of the Genomic Rank Distance to Indels


Thien Le, Aaron Sy, Erin K. Molloy, Qiuyi (Richard) Zhang, Satish Rao and Tandy Warnow. Using INC within Divide-and-Conquer Phylogeny Estimation


Alona Levy-Jurgenson, Xavier Tekpli, Vessela N. Kristensen and Zohar Yakhini. Predicting Methylation from Sequence and Gene Expression Using Deep Learning with Attention


15:40 - 16:50    Poster session II


17:00        Walk around the campus


---


Thursday, May 30


09:30 - 10:20    Tandy Warnow. Advances in Mathematical Approaches to Constructing the Tree of Life - Invited lecture


10:20 - 10:35    Break


10:35 - 11:50


Kari Nousiainen, Jukka Intosalmi and Harri Lähdesmäki. A Mathematical Model for Enhancer Activation Kinetics during Cell Differentiation


Atif Rahman and Lior Pachter. Transcript Abundance Estimation and the Laminar Packing Problem


Peng Xiao, Xingyu Cai and Sanguthevar Rajasekaran. Efficient Algorithms for Finding Edit-distance Based Motifs


11:50 - 12:00    Closing


12:00    Lunch

 


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